PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G414800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 404aa    MW: 44476 Da    PI: 8.266
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G414800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.61.9e-2878177199
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +CaaCk+ + kC ++C lapyfpa+++k++  vhk+FG+ nv+k l +l+  +   +a++slv+eA+++ +dP+ G +g ++++ q+ ++l 
  Aqcoe2G414800.1.p  78 QCAACKHTKSKCDEKCKLAPYFPADKEKDYVEVHKIFGRCNVTKSLVNLSSRDdAATAIDSLVWEAQWWKEDPIGGPYGEYKRICQDNQRLI 169
                        6************************************************66664899*****************************999998 PP

             DUF260  92 aelallke 99 
                        +e  +l++
  Aqcoe2G414800.1.p 170 TENMRLQQ 177
                        88776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.2577179IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-2578173IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MTRNKATIEQ GDNGVSGDSH AGQGNVVIGV HGKRKVQRRT LKGAKEAITG IHGHNQGVNY  60
ATNSIDNGGS VGAHKKGQCA ACKHTKSKCD EKCKLAPYFP ADKEKDYVEV HKIFGRCNVT  120
KSLVNLSSRD DAATAIDSLV WEAQWWKEDP IGGPYGEYKR ICQDNQRLIT ENMRLQQLLL  180
RSMNVPTIPN RYMTHGLVIN HNDVGGLNMI DSGVNHPYNN VNHNNHDNSV NYAQNSSNGI  240
DRGVLIDDGR FDDVLGNRSL NFGAQPYTIN VPPTQEQQPT GVFQGADGSL NDITNATGSI  300
HDIYSHYISF PRQPNCHFVG SLCILCSVVT IRALLSSLTS EFCGRISDYD WSMWIIVVTQ  360
ILTIVIGSSA TSFRSWFTLV KNLKYNPIGK ALKDETRTLI NSN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-26LOB domain-containing protein 2